| Protein ZmSRS9 | |
|---|---|
|
ZmSRS9 is a protein in the SHI/STY (SRS) family.
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| Information | |
| TF Name: | ZmSRS9 |
| Species: | Maize |
| TF Family: | SHI/STY (SRS) |
| Gene Name(Synonym): | LRP1 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 2 |
Protein ZmSRS9
ZmSRS9 is a protein in the SHI/STY (SRS) family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF05142 | |
| Zm00001eb362740_T001 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d011843 | DAPseq |  |
sequence | fimo | position |
| Zm00001d011843 | DAPseq |  |
sequence | fimo | position |
| Zm00001d011843 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d011843 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmSRS9 is the regulator
Interactions where ZmSRS9 is the target
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Zm00001eb362740_T001 from maize genome v5
Amino Acid Sequence
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MNYGMADVGMVVVAPAASFHHTHHHHHHHEAAAAAAAAAAASGDPIFPLLSGGPCVLDPDKSASASAIQFWQQQPPPPSS
PAAAAGANPNPSASPFAYLKKPLPMLDAGAGSSGSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKSTWVPAAR
RRERQQLAASGSASSSPATASAAAVAASASASASKKPRLLSSQTTTSHTSTSNATTPRSFDTTSSHQDASFRDSLPRQVR
APAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDDGRHAATSNDDCTAGGVPNISELHLGAASGSGAGTGT
SMSMAPPTGLYGGGGGGHHPHILGGSSSYGNTMN
MNYGMADVGMVVVAPAASFHHTHHHHHHHEAAAAAAAAAAASGDPIFPLLSGGPCVLDPDKSASASAIQFWQQQPPPPSS
PAAAAGANPNPSASPFAYLKKPLPMLDAGAGSSGSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKSTWVPAAR
RRERQQLAASGSASSSPATASAAAVAASASASASKKPRLLSSQTTTSHTSTSNATTPRSFDTTSSHQDASFRDSLPRQVR
APAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDDGRHAATSNDDCTAGGVPNISELHLGAASGSGAGTGT
SMSMAPPTGLYGGGGGGHHPHILGGSSSYGNTMN
MNYGMADVGMVVVAPAASFHHTHHHHHHHEAAAAAAAAAAASGDPIFPLLSGGPCVLDPDKSASASAIQFWQQQPPPPSS
PAAAAGANPNPSASPFAYLKKPLPMLDAGAGSSGSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKSTWVPAAR
RRERQQLAASGSASSSPATASAAAVAASASASASKKPRLLSSQTTTSHTSTSNATTPRSFDTTSSHQDASFRDSLPRQVR
APAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDDGRHAATSNDDCTAGGVPNISELHLGAASGSGAGTGT
SMSMAPPTGLYGGGGGGHHPHILGGSSSYGNTMN
MNYGMADVGMVVVAPAASFHHTHHHHHHHEAAAAAAAAAAASGDPIFPLLSGGPCVLDPDKSASASAIQFWQQQPPPPSS
PAAAAGANPNPSASPFAYLKKPLPMLDAGAGSSGSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKSTWVPAAR
RRERQQLAASGSASSSPATASAAAVAASASASASKKPRLLSSQTTTSHTSTSNATTPRSFDTTSSHQDASFRDSLPRQVR
APAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDDGRHAATSNDDCTAGGVPNISELHLGAASGSGAGTGT
SMSMAPPTGLYGGGGGGHHPHILGGSSSYGNTMN
MNYGMADVGMVVVAPAASFHHTHHHHHHHEAAAAAAAAAAASGDPIFPLLSGGPCVLDPDKSASASAIQFWQQQPPPPSS
PAAAAGANPNPSASPFAYLKKPLPMLDAGAGSSGSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKSTWVPAAR
RRERQQLAASGSASSSPATASAAAVAASASASASKKPRLLSSQTTTSHTSTSNATTPRSFDTTSSHQDASFRDSLPRQVR
APAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDDGRHAATSNDDCTAGGVPNISELHLGAASGSGAGTGT
SMSMAPPTGLYGGGGGGHHPHILGGSSSYGNTMN
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF05142 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CATGAACTACGGGATGGCCGACGTG...
CATGAACTACGGGATGGCCGACGTGGGGATGGTCGTCGTCGCGCCCGCCGCCTCCTTCCACCACACGCACCACCACCACCACCACCACGAGGCCGCCGCCGCCGCCGCCGCGGCTGCGGCGGCCTCCGGCGACCCCATCTTCCCGCTGCTCTCCGGCGGCCCCTGCGTGCTTGATCCGGACAAGTCGGCCTCCGCCAGCGCCATCCAGTTCTGGCAGCAGCAGCCTCCGCCGCCGTCGTCGCCGGCTGCTGCAGCGGGCGCTAACCCTAACCCTAGCGCCAGCCCCTTCGCCTACCTCAAGAAGCCCCTCCCGATGCTGGACGCCGGCGCCGGCTCCTCAGGCTCCGGCGCCACCACGTGCCAGGACTGCGGCAACCAAGCGAAGAAGGACTGCGGCCACAACCGGTGCCGCACCTGCTGCAAGAGCCGCGGCTTCGACTGCAACACGCACGTCAAGAGCACCTGGGTCCCCGCCGCCCGCCGCCGCGAGCGCCAGCAGCTCGCCGCCTCCGGCTCCGCCTCGTCCTCCCCCGCCACCGCCTCCGCGGCGGCCGTCGCCGCGTCCGCGTCCGCGTCCGCGTCCAAGAAGCCCCGCCTCCTCTCGTCGCAGACCACCACCTCGCACACGTCCACCTCCAACGCCACGACGCCCCGAAGCTTCGACACCACGTCCAGCCACCAAGACGCGTCGTTCAGGGACAGCCTCCCGAGGCAGGTGCGCGCGCCGGCGGTGTTCAAGTGCGTGCGCGTGACGTCCATCGAGGACGGCGAGGACGAGTACGCGTACCAGGCGACGGTCACCATCAACGGCCACCTCTTCAAGGGGTTCCTGTACGACCAGGGCCCCGACGACGGGCGCCACGCGGCCACCAGCAACGACGACTGCACGGCCGGCGGGGTGCCCAACATCTCCGAGCTCCATCTCGGAGCGGCGTCTGGTTCCGGCGCCGGCACCGGCACCTCGATGTCGATGGCTCCTCCCACGGGGCTGTACGGTGGCGGTGGCGGAGGACATCATCCGCACATTCTCGGCGGGTCGTCGAGCTACGGTAACACCATGAACTGATGGAGTACGTTCCTTCCTTGTACACCGGAAGAGTCCCGGCCCGTTAATTTCCATTCCTTGTTGCTCTTCATTTTCCACGCTATAGTAGCAGAGTTCAATTTTCTCAGCCTTGTCACTCACCCGGCGCCATAGATAGCAGGGCATCAATGCATGGTGTTATTCTGTTCTACCTCCTTCATTCCATCGTCCTACTGTGTTATTTAGCCATTCGTTGGTGTATAATAACATCGATGAGTTGTTTTTTCTTCTTCTTCCAGTTGTTCTACTGCTATAGCAAGTACTGCACTGCTAGTTCTTTT
GRMZM2G077752_T01 from maize genome v3
Amino Acid Sequence
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MRQAAAMNYGMADVGMVVVAPAASFHHTHHHHHHHEAAAAAAAAAAASGDPIFPLLSGGPCVLDPDKSASASAIQFWQQQ
PPPPSSPAAAAGANPNPSASPFAYLKKPLPMLDAGAGSSGSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKST
WVPAARRRERQQLAASGSASSSPATASAAAVAASASASASKKPRLLSSQTTTSHTSTSNATTPRSFDTTSSHQDASFRDS
LPRQVRAPAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDDGRHAATSNDDCTAGGVPNISELHLGAASGS
GAGTGTSMSMAPPTGLYGGGGGGHHPHILGGSSSYGNTMN
Nucleotide Sequence
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AGCTCCCCACTCTCTCTCCGCTGCT...
AGCTCCCCACTCTCTCTCCGCTGCTGCCTCCGCGGACGGATTCCATCCCCGGCCCTATAAGTGTGGCTTCGGGACGGCGCTTCCCATCCGACACCGGCGCCTTCGCGGACTGGGTCGCCTCCTCCGCCGCCGCGGCGCGCGGGGACGACCTCTCCCTCGGCTTCAATGCCAGCGCGGCGGCCGCCGCGGCCGCGGCCGCCTCCGGCGCCTCGCTGGGCGCGGGCCTCTGGGGCCCGGCGTCCTCCGCCTCCGCCGCCATGCGCCAGGCGGCCGCCATGAACTACGGGATGGCCGACGTGGGGATGGTCGTCGTCGCGCCCGCCGCCTCCTTCCACCACACGCACCACCACCACCACCACCACGAGGCCGCCGCCGCCGCCGCCGCGGCTGCGGCGGCCTCCGGCGACCCCATCTTCCCGCTGCTCTCCGGCGGCCCCTGCGTGCTTGATCCGGACAAGTCGGCCTCCGCCAGCGCCATCCAGTTCTGGCAGCAGCAGCCTCCGCCGCCGTCGTCGCCGGCTGCTGCAGCGGGCGCTAACCCTAACCCTAGCGCCAGCCCCTTCGCCTACCTCAAGAAGCCCCTCCCGATGCTGGACGCCGGCGCCGGCTCCTCAGGCTCCGGCGCCACCACGTGCCAGGACTGCGGCAACCAAGCGAAGAAGGACTGCGGCCACAACCGGTGCCGCACCTGCTGCAAGAGCCGCGGCTTCGACTGCAACACGCACGTCAAGAGCACCTGGGTCCCCGCCGCCCGCCGCCGCGAGCGCCAGCAGCTCGCCGCCTCCGGCTCCGCCTCGTCCTCCCCCGCCACCGCCTCCGCGGCGGCCGTCGCCGCGTCCGCGTCCGCGTCCGCGTCCAAGAAGCCCCGCCTCCTCTCGTCGCAGACCACCACCTCGCACACGTCCACCTCCAACGCCACGACGCCCCGAAGCTTCGACACCACGTCCAGCCACCAAGACGCGTCGTTCAGGGACAGCCTCCCGAGGCAGGTGCGCGCGCCGGCGGTGTTCAAGTGCGTGCGCGTGACGTCCATCGAGGACGGCGAGGACGAGTACGCGTACCAGGCGACGGTCACCATCAACGGCCACCTCTTCAAGGGGTTCCTGTACGACCAGGGCCCCGACGACGGGCGCCACGCGGCCACCAGCAACGACGACTGCACGGCCGGCGGGGTGCCCAACATCTCCGAGCTCCATCTCGGAGCGGCGTCTGGTTCCGGCGCCGGCACCGGCACCTCGATGTCGATGGCTCCTCCCACGGGGCTGTACGGTGGCGGTGGCGGAGGACATCATCCGCACATTCTCGGCGGGTCGTCGAGCTACGGTAACACCATGAACTGATGGAGTACGTTCCTTCCTTGTACACCGGAAGAGTCCCGGCCCGTTAATTTCCATTCCTTGTTGCTCTTCATTTTCCACGCTATAGTAGCAGAGTTCAATTTTCTCAGCCTTGTCACTCACCCGGCGCCATAGATAGCAGGGCATCAATGCATGGTGTTATTCTGTTCTACCTCCTTCATTCCATCGTCCTACTGTGTTATTTAGCCATTCGTTGGTGTATAATAACATCGATGAGTTGTTTTTTCTTCTTCTTCCAGTTGTTCTACTGCTATAGCAAGTACTGCACTGCTAGTTCTTTTCCCCCCTATCACACTAGTTGGGTACGTACGTAGAGAGGAGAATAATTGTTAGTAGGAATTGGGAAGAAGATACTCTCGGTAGTGCAAAGATTAAATTTTTTACCATTGTGCATAAGATATCGCCTGCTAGCTGGTTCCCAATGCCTG
Zm00001d011843_T001 from maize genome v4
Amino Acid Sequence
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MRQAAAMNYGMADVGMVVVAPAASFHHTHHHHHHHEAAAAAAAAAAASGDPIFPLLSGGPCVLDPDKSASASAIQFWQQQ
PPPPSSPAAAAGANPNPSASPFAYLKKPLPMLDAGAGSSGSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCNTHVKST
WVPAARRRERQQLAASGSASSSPATASAAAVAASASASASKKPRLLSSQTTTSHTSTSNATTPRSFDTTSSHQGTSYPPF
TEQHHAVHGRILPTQTVSRRAADASFRDSLPRQVRAPAVFKCVRVTSIEDGEDEYAYQATVTINGHLFKGFLYDQGPDDG
RHAATSNDDCTAGGVPNISELHLGAASGSGAGTGTSMSMAPPTGLYGGGGGGHHPHILGGSSSYGNTMN
Nucleotide Sequence
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ATGCGCCAGGCGGCCGCCATGAACT...
ATGCGCCAGGCGGCCGCCATGAACTACGGGATGGCCGACGTGGGGATGGTCGTCGTCGCGCCCGCCGCCTCCTTCCACCACACGCACCACCACCACCACCACCACGAGGCCGCCGCCGCCGCCGCCGCGGCTGCGGCGGCCTCCGGCGACCCCATCTTCCCGCTGCTCTCCGGCGGCCCCTGCGTGCTTGATCCGGACAAGTCGGCCTCCGCCAGCGCCATCCAGTTCTGGCAGCAGCAGCCTCCGCCGCCGTCGTCGCCGGCTGCTGCAGCGGGCGCTAACCCTAACCCTAGCGCCAGCCCCTTCGCCTACCTCAAGAAGCCCCTCCCGATGCTGGACGCCGGCGCCGGCTCCTCAGGCTCCGGCGCCACCACGTGCCAGGACTGCGGCAACCAAGCGAAGAAGGACTGCGGCCACAACCGGTGCCGCACCTGCTGCAAGAGCCGCGGCTTCGACTGCAACACGCACGTCAAGAGCACCTGGGTCCCCGCCGCCCGCCGCCGCGAGCGCCAGCAGCTCGCCGCCTCCGGCTCCGCCTCGTCCTCCCCCGCCACCGCCTCCGCGGCGGCCGTCGCCGCGTCCGCGTCCGCGTCCGCGTCCAAGAAGCCCCGCCTCCTCTCGTCGCAGACCACCACCTCGCACACGTCCACCTCCAACGCCACGACGCCCCGAAGCTTCGACACCACGTCCAGCCACCAAGGTACGTCCTACCCGCCATTTACCGAGCAGCATCACGCCGTCCACGGTCGGATCCTTCCCACCCAAACCGTGTCTCGTCGCGCTGCAGACGCGTCGTTCAGGGACAGCCTCCCGAGGCAGGTGCGCGCGCCGGCGGTGTTCAAGTGCGTGCGCGTGACGTCCATCGAGGACGGCGAGGACGAGTACGCGTACCAGGCGACGGTCACCATCAACGGCCACCTCTTCAAGGGGTTCCTGTACGACCAGGGCCCCGACGACGGGCGCCACGCGGCCACCAGCAACGACGACTGCACGGCCGGCGGGGTGCCCAACATCTCCGAGCTCCATCTCGGAGCGGCGTCTGGTTCCGGCGCCGGCACCGGCACCTCGATGTCGATGGCTCCTCCCACGGGGCTGTACGGTGGCGGTGGCGGAGGACATCATCCGCACATTCTCGGCGGGTCGTCGAGCTACGGTAACACCATGAACTGA
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